PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc08088.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 560aa    MW: 61212.6 Da    PI: 8.689
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc08088.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-07188238140
                                   TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqc 40 
                                   r rW+teE+ +++da      +            +Wk+I + +  ++t+ q+
  Zmw_sc08088.1.g00020.1.am.mk 188 RERWSTEEHGRFLDALLIVERDeqiavaffrfgrDWKKIEEQVR-TKTAVQV 238
                                   78******************99**********************.****998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.78E-5182240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-4185213IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-4269298IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MWRTGRPRTE TCACCVTSSF EAVARVVLPK LPVCRNSQTT RPVRIRTQPG THALLSPREP  60
ADFPEPERTV AISFFPHMFF SRLTDDTSLS DATRSQSHHH QPVGWRAQAT SYDAATRLRP  120
APHLHFNSWL NCRRSIRVRV ACYISASVLG EDGICTSATR LTMDGGGSNH ETPGGKKARK  180
PYTITKPRER WSTEEHGRFL DALLIVERDE QIAVAFFRFG RDWKKIEEQV RTKTAVQVTS  240
SSCSISIRAF ALFGGRIPQV QNELIEMQSS CSSLVVTFAS TCVQIRSHAQ KYFIKVQKLG  300
LAAGLPPQYP RRRFVMHQQQ QQGSTSTAGS SAAAVPVLQG QPHGAPVAVP MPGPSCDGVV  360
VHGSLGWDCA GILPSTAGGK HLCSATVYFL INAPGTSAWV NTDGHGQIAP PASLIGTPSF  420
SDATVDWAGS SSSKPLASGD AQDEFIQLPL SPDDLNFARV YRFVGDMFDP NTVCQVDSHL  480
QRLKGMDDIT VKTILLVLRN LETNLSAPQF EPVVSSSTPL VSHPCVHPEY QSGMRQVVLP  540
LEQYRHFVQA LGKFDAAGLA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701662.12e-96PREDICTED: protein REVEILLE 4-like isoform X1
TrEMBLI1NKD35e-91I1NKD3_ORYGL; Uncharacterized protein
STRINGORGLA01G0032300.11e-90(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170